PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000594000
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 171aa    MW: 19536.5 Da    PI: 8.4471
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000594000genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP82.88.4e-2660134273
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec 73 
                     g+kdrhsk++T +g RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +   ++  l+g        +    +ec
  MDP0000594000  60 FGGKDRHSKVCTIRGFRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDDDHNQVRLLPGKehevqryK----HEC 134
                    689*********************************************************999955433330....333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-2562140IPR005333Transcription factor, TCP
PROSITE profilePS5136924.41562120IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGVERYYQLA KXPATIGYRK LENGLPEGGE EQQKYSGGXL WSSTTSRECD PRIVRASRAF  60
GGKDRHSKVC TIRGFRDRRV RLSVPTAIQL YDLQERLGLN QPSKVVDWLL DDDHNQVRLL  120
PGKEHEVQRY KHECSYQPSS SSFWLLGFSK ATKEGSLYVS TLKMIEEEDE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.229872e-86bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010671e-44KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348175.11e-72PREDICTED: transcription factor TCP13-like
SwissprotQ9LEZ94e-36TCP17_ARATH; Transcription factor TCP17
TrEMBLA0A061EN214e-37A0A061EN21_THECC; Plastid transcription factor 1, putative isoform 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.12e-37TCP domain protein 17